Librarycasting SE: Life Sciences Content http://blog.vcu.edu/lse/ Screencasts, podcasts, tutorials and titles for the sciences and engineering en Copyright 2007 Thu, 01 Mar 2007 20:14:52 -0500 http://www.sixapart.com/movabletype/?v=3.34 http://blogs.law.harvard.edu/tech/rss NCBI classes are scheduled during spring break (March 12 - 14) Several NCBI (National Center for Biotechnology Information) lectures and computer workshops will be held on the MCV campus (Sanger Hall and Tompkins-McCaw Library) during the first few days (March 12 - 14) of spring break. Class titles are listed below below. These classes will be taught by visiting staff from the National Library of Medicine. For complete class descriptions, scheduled times, and to register for the classes, go to the VCU Training website, type "ncbi" (without the asterisks) into the keyword search box, and click the "Search" button to see a listing of all the NCBI classes being offered.

Class Titles:
- NCBI Field Guide Update
- Making Sense of DNA and Protein Sequences
- Blast Quick Start
- Identification of Disease Genes
- Correlating Disease Genes and Phenotypes

]]> http://blog.vcu.edu/lse/2007/03/ncbi_classes_are_scheduled_dur.html http://blog.vcu.edu/lse/2007/03/ncbi_classes_are_scheduled_dur.html Thu, 01 Mar 2007 20:14:52 -0500 Using RefShare to share your citations with students and colleagues RefShare is a new feature that has recently been added to the VCU RefWorks subscription. It allows you to easily share citations and references online, that you have already imported into RefWorks, with other students and colleagues. Sharing any RefWorks folder containing the references you wish to share is as easy as clicking on the "Share Folder" button for that folder. This creates a unique hyperlink that can be pasted into a web page, Blackboard class page, etc.

A few possible applications for this feature include:
- Shared reference lists for collaborative projects such as research proposals, student group projects, etc.
- Required reading lists for students to view
- Lists of publications for researchers, faculty

Because RefShare is fully integrated with RefWorks, it takes advantage of already-existing capabilities for easy retrieval and organization of literature citations from almost any database at VCU Libraries, and the automatic creation of in-line citations and references in your final Word document. Additionally, RefWorks/RefShare is RSS-capable, and can be used to search and import citations from the VCU Libraries Catalog.

If you would like to know more about RefShare and RefWorks, take a look at some of the video tutorials listed below. In addition, VCU Libraries provides several training workshops throughout the academic year.

view_screencast_button_v1.jpg (RefShare video tutorials)

view_screencast_button_v1.jpg (RefWorks video tutorials)


]]> http://blog.vcu.edu/lse/2007/01/using_refshare_to_share_your_c.html http://blog.vcu.edu/lse/2007/01/using_refshare_to_share_your_c.html Tue, 16 Jan 2007 17:32:32 -0500 iPod Video Tutorial for NCBI's Cn3D Molecular Viewer Cn3D is a versatile, free molecular viewer available from the National Center for Biotechnology Information (NCBI). The video tutorial (2 minutes, 21 seconds, workstation version) illustrates how to use Cn3D to customize and annotate the appearance of a known molecular structure.

Cn3D has many additional capabilities, which are described in traditional web-based tutorials at the NCBI website.

To download the file for a video iPod: right-click on the first iPod video link immediately below for pc, shift-click for mac
(4.8 MB, 2 minute 3 seconds).

view_screencast_button_v1.jpg (video for normal workstation playback, 2 minutes 21 seconds)

]]> http://blog.vcu.edu/lse/2006/11/ipod_video_tutorial_for_ncbis.html http://blog.vcu.edu/lse/2006/11/ipod_video_tutorial_for_ncbis.html Wed, 08 Nov 2006 11:30:13 -0500 RSS Feeds for Searches and Citations in Web of Science You can setup RSS feeds for searches (search alerts) that you run in Web of Science / Science Citation Index. This means automatic updates for specific searches that you have run in WOS. A similar feature is available for monitoring the citation of a specific article by other authors (citation alerts).

For search alerts, access this feature by running the search of interest, then click on the Search History button near the top of the page, then click Save History button . You'll be prompted to login (click the register link to setup a new user name and password). The Save Search History page (for e-mail alerts setup) will appear, enter a History Name and click the Save button; leave the A Server Save Confirmation page will appear with an orange XML button; this is the RSS feed for the search.

Citation alerts work by opening the record for the specific article of interest, clicking the Create Citation Alert button on the right, and login as needed. The XML button for the feed appears in the Citation Alerts Save Confirmation page.

Note that the alerts will also go to an e-mail box, there is no option to only receive the RSS alert.

]]> http://blog.vcu.edu/lse/2006/10/rss_feeds_for_searches_and_cit.html http://blog.vcu.edu/lse/2006/10/rss_feeds_for_searches_and_cit.html Tue, 24 Oct 2006 12:42:58 -0500 Fall Workshop: Molecular Structures and Properties - Finding Information This Thursday, the workshop will introduce three important tools for molecular structure viewing and searching: Scifinder Scholar (Chemical Abstracts Service), Crossfire Commander for Beilstein / Gmelin (MDL), and Entrez Structure / Cn3D (National Center for Biotechnology Information). More info ...

Time & Location: Thursday, October 26, 2006, 11:00 - 12:00 noon, Cabell Library 3rd floor instruction classroom.

Register for the workshop

]]> http://blog.vcu.edu/lse/2006/10/fall_workshop_molecular_struct_1.html http://blog.vcu.edu/lse/2006/10/fall_workshop_molecular_struct_1.html Mon, 23 Oct 2006 13:15:19 -0500 PubMed News Feeds (RSS) PubMed makes it easier to stay current with some of its literature and bioinformatics databases by providing several news feeds in the RSS 2.0 format. These feeds, available at the NCBI website, describe the latest enhancements in the PubMed database, the PubMed Central full-text repository, new entries in the Unigene and Homologene databases, etc. There is also a brief FAQ page about PubMed RSS. If you would like to learn more about using RSS to stay current with research literature, there's a video tutorial (3 minutes, 19 seconds) about this topic.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/10/pubmed_news_feeds_rss.html http://blog.vcu.edu/lse/2006/10/pubmed_news_feeds_rss.html Tue, 03 Oct 2006 15:36:40 -0500 Fall Workshop: Molecular Structures and Properties - Finding Information This workshop introduces three important tools for molecular structure viewing and searching: Scifinder Scholar (Chemical Abstracts Service), Crossfire Commander for Beilstein / Gmelin (MDL), and Entrez Structure / Cn3D (National Center for Biotechnology Information).

Thursday, October 26, 2006, 11:00 - 12:00 noon, Cabell Library 3rd floor instruction classroom
Register

]]> http://blog.vcu.edu/lse/2006/08/fall_workshop_molecular_struct.html http://blog.vcu.edu/lse/2006/08/fall_workshop_molecular_struct.html Mon, 21 Aug 2006 10:38:20 -0500 Fall Workshop: Automated Research Updates Using RSS and e-Mail Alerts for the Sciences and Engineering Journal table of contents, science news, and search results from some databases can be automically monitored using two technology-based techniques, RSS and e-mail alerts. This introductory workshop demonstrates how to do this.

Thursday, September 7, 11 - 11:50 am, Cabell Library 3rd floor instruction classroom
Register for the workshop

]]> http://blog.vcu.edu/lse/2006/08/fall_workshop_automated_resear.html http://blog.vcu.edu/lse/2006/08/fall_workshop_automated_resear.html Mon, 21 Aug 2006 10:25:45 -0500 Finding U.S. Patents (screencast tutorial) VCU Libraries is a Patent and Trademark Depository Library (PTDL). This screencast tutorial provides a brief introduction (3 minutes 21 seconds, with audio) to some methods for beginning a search for U.S. patents. Topics covered include:

- Navigating to online patent resources
- Searching using a patent number
- Searching using an inventor name
- Searching using class/subclass numbers and the manual of patent classification
- Finding patent search templates

view_screencast_button_v1.jpg listento_podcast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/06/finding_us_patents.html http://blog.vcu.edu/lse/2006/06/finding_us_patents.html Thu, 01 Jun 2006 15:53:54 -0500 Presentation on GIS and Public Health Data Tompkins-McCaw Library is sponsoring a presentation entitled "GIS and Public Health Data: Towards a Better Understanding of the Magnitude of U.S. Public Health Disparities," by Dr. Charles Croner, Geographer and Survey Statistician, CDC, next Wednesday (6/8/06), 10 - 12 noon. This event is open to the public, registration required.

]]> http://blog.vcu.edu/lse/2006/05/presentation_on_gis_and_public.html http://blog.vcu.edu/lse/2006/05/presentation_on_gis_and_public.html Wed, 31 May 2006 15:52:38 -0500 Podcasts from the NIH (National Institutes of Health) NIH Radio presents recent research findings in a journalistic-news, podcast-ready format. The podcast archive started this past March, and there are currently two episodes a month. The online NIH Radio archive (downloadable mp3 files) began in May 2005.

rss button 1 v4.png (for NIH podcasts)

]]> http://blog.vcu.edu/lse/2006/05/podcasts_from_the_nih_national.html http://blog.vcu.edu/lse/2006/05/podcasts_from_the_nih_national.html Fri, 19 May 2006 17:01:15 -0500 Video Tutorial for the Protein Data Bank (PDB) The Protein Data Bank is the international, public-domain depository for macromolecular (protein and nucleic acid) 3D structure data.

The narrated PDB video tutorial covers many facets of the website, incuding:
- searching, browsing and query results pages
- structure summary pages
- several alternatives for viewing 3D molecular structures
- downloading structure coordinate files (PDB files)

The PDB also provides several traditional web-page tutorials describing data deposit procedures. More tutorials about this are here.

There is also an RSS feed for the latest released structures

rss button 1 v4.png (for latest structures)

]]> http://blog.vcu.edu/lse/2006/04/video_tutorial_for_the_protein.html http://blog.vcu.edu/lse/2006/04/video_tutorial_for_the_protein.html Thu, 06 Apr 2006 21:51:14 -0500 Video Tutorial for NCBI's Cn3D Molecular Viewer Cn3D is free molecular viewer software available from NCBI, a division of the National Library of Medicine. This video tutorial (2 minutes, 21 seconds) illustrates how to use Cn3D to customize and annotate the appearance of a known molecular structure. It also briefly discusses basic searching in Entrez Structure, and the PDB (Protein Data Bank), where all protein data is archived.

Cn3D also has many additional capabilities, which are described in traditional web-based tutorials at the NCBI website.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/04/video_tutorial_for_ncbis_cn3d.html http://blog.vcu.edu/lse/2006/04/video_tutorial_for_ncbis_cn3d.html Thu, 06 Apr 2006 21:22:24 -0500 iPod-ready Video Tutorials - Finding New / Recently Purchased Books Librarycasting SE is beginning to also provide some iPod-ready video tutorials. These have been specially adapted to fit the small video iPod screen. The first one is entitled "Finding New / Recently Purchased Books."

Download Links (right-click on link for pc, shift-click for mac):

(2.7 MB, 1 minute 1 second).

(1.7 MB, 1 minute).

]]> http://blog.vcu.edu/lse/2006/03/ipodready_video_tutorials.html http://blog.vcu.edu/lse/2006/03/ipodready_video_tutorials.html Mon, 27 Mar 2006 19:09:44 -0500 Mobile Technology Fair 2006 Mobile Technology Fair 2006, covering "the latest trends in mobile computing technology" will be held at the Tompkins-McCaw Library on the MCV Campus on Thursday, April 6. The schedule includes vendor exhibits and presentations on a variety of mobile technology applications (PDA, blog, tablet PC, GIS, iPod, etc.).

]]> http://blog.vcu.edu/lse/2006/03/mobile_technology_fair_2006.html http://blog.vcu.edu/lse/2006/03/mobile_technology_fair_2006.html Tue, 21 Mar 2006 17:37:31 -0500 PubMed Video Tutorials The National Library of Medicine has produced several screencast tutorials for the PubMed database. The tutorials are 1 - 7 minutes in length, and include audio. Topics covered are:

- searching PubMed by author, subject
- finding a specific journal
- saving searches, citations online using MyNCBI
- using the MeSH controlled vocabulary (subject terms)
- and others ...

A more traditional webpage-based PubMed tutorial is also available.

]]> http://blog.vcu.edu/lse/2006/03/pubmed_video_tutorials.html http://blog.vcu.edu/lse/2006/03/pubmed_video_tutorials.html Thu, 02 Mar 2006 11:27:02 -0500 Finding Online Tutorials at VCU Libraries (Screencast) This screencast (video tutorial, 1 minute 47 seconds, with audio) describes how to locate many other tutorials available through VCU Libraries. The available tutorials cover both general library services and subjec-specific resources relevant to the sciences and engineering.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/02/finding_online_tutorials_at_vc.html http://blog.vcu.edu/lse/2006/02/finding_online_tutorials_at_vc.html Tue, 28 Feb 2006 19:37:16 -0500 Searching for New Book Titles at VCU Libraries VCU Libraries has recently added a search feature for recently purchased items, called "New Titles," to its online catalog. New titles are currently defined as those acquired within the last three months. This feature can be accessed by clicking on the yellow "New Titles" tab at near the top of the library catalog search page. A screencast tutorial (47 seconds) demonstrating this new feature is now available. There is also an iPod-readyvideo tutorial available for downloading (2.7MB).

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/02/searching_for_new_book_titles.html http://blog.vcu.edu/lse/2006/02/searching_for_new_book_titles.html Tue, 28 Feb 2006 18:57:33 -0500 Staying Current Using RSS Automatic Updates RSS is an easy, automated way to stay current with research news, recent journal articles, the latest search results from a few databases (eg., PubMed, Compendex / Engineering Village), and even new tutorials from VCU Libraries. There is a screencast tutorial (3minutes, 19 seconds) that describes how to do this. In addition, workshops (see the library schedule) are taught each semester that describe the use of RSS in more detail than the tutorial.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/02/staying_current_using_rss_auto.html http://blog.vcu.edu/lse/2006/02/staying_current_using_rss_auto.html Mon, 27 Feb 2006 18:45:32 -0500 Automated Updates of Journal Article Titles and Database Search Results for the Health Sciences Description: Staying current with developments in the health sciences is important for both research endeavors and academic assignments. This introductory workshop describes two technology-based techniques, RSS and search alerts, to automate portions of this process. These techniques can be used to monitor research journal tables of contents, updates from specific database searches, and science research news. The technology is accessible and free to all VCU-affiliated users. This workshop will demonstrate applications of RSS and search alerts for selected health science resources, and illustrate setup methods.

Time: Wednesday, May 10, 2006, Noon - 1:00 pm

Place: Nursing Education Bldg - Computer Lab, 4th Floor, MCV Campus

Sponsor: VCU Libraries

Register

]]> http://blog.vcu.edu/lse/2006/02/automated_updates_of_journal_a_1.html http://blog.vcu.edu/lse/2006/02/automated_updates_of_journal_a_1.html Upcoming Classes and Events Wed, 22 Feb 2006 13:45:12 -0500 Automated Updates of Journal Article Titles and Database Search Results for the Health Sciences Description: Staying current with developments in the health sciences is important for both research endeavors and academic assignments. This introductory workshop describes two technology-based techniques, RSS and search alerts, to automate portions of this process. These techniques can be used to monitor research journal tables of contents, updates from specific database searches, and science research news. The technology is accessible and free to all VCU-affiliated users. This workshop will demonstrate applications of RSS and search alerts for selected health science resources, and illustrate setup methods.

Time: 3/15/2006 Noon - 1 pm

Place: The Learning Center, 1st floor, VCUHS (Main Hospital), MCV Campus

Sponsor: VCU Libraries

Register

]]> http://blog.vcu.edu/lse/2006/02/automated_updates_of_journal_a.html http://blog.vcu.edu/lse/2006/02/automated_updates_of_journal_a.html Upcoming Classes and Events Wed, 22 Feb 2006 13:29:26 -0500 NOVA Podcasts Nova (PBS) currently produces a podcast, a vodcast (video podcast), and an RSS feed. The podcast, currently produced about once a month, is science-story and interview focused. The video podcasts (currently twice a month) are excerpts from the TV program, and require Apple Quicktime 7 to run. The RSS feed links to Nova webpages that feature TV program clips, transcripts, answers from subject experts, discussion forums, etc.

]]> http://blog.vcu.edu/lse/2006/01/nova_podcasts.html http://blog.vcu.edu/lse/2006/01/nova_podcasts.html Mon, 30 Jan 2006 16:03:28 -0500 Podcasts from the journal Nature This weekly podcast includes research news and highlights, including interviews. Nature podcasts were started very recently (the first podcast in the online archive is dated 10/5/05).

rss button 1 v4.png

]]> http://blog.vcu.edu/lse/2006/01/podcasts_from_the_journal_natu.html http://blog.vcu.edu/lse/2006/01/podcasts_from_the_journal_natu.html Mon, 30 Jan 2006 11:12:21 -0500 Finding Protein Domain Information (screencast tutorial) This tutorial (2 minutes 30 seconds) describes how to find conserved domain information. Conserved domains contain conserved amino acid sequence patterns, and correlate to protein stucture and function. Organism information is included in the domain records.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/01/finding_protein_domain_informa.html http://blog.vcu.edu/lse/2006/01/finding_protein_domain_informa.html Sun, 29 Jan 2006 16:34:29 -0500 Gene Maps and the Promoter Region (screencast tutorial) This tutorial (2 minutes 59 seconds) describes how to use NCBI's gene Map Viewer resource to access the promoter region of a gene.


view_screencast_button_v1.jpg


]]> http://blog.vcu.edu/lse/2006/01/gene_maps_and_the_promoter_reg.html http://blog.vcu.edu/lse/2006/01/gene_maps_and_the_promoter_reg.html Sun, 29 Jan 2006 16:26:21 -0500 Finding Gene Exons and Introns (screencast tutorial) This tutorial (50 seconds) describes how to locate intron and exon sequence information for a specific gene, using the gene table feature of NCBI's Entrez Gene resource.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/01/finding_gene_exons_and_introns.html http://blog.vcu.edu/lse/2006/01/finding_gene_exons_and_introns.html Sun, 29 Jan 2006 16:20:43 -0500 Finding Gene Sequences (screencast tutorial) This tutorial (1 minute 45 seconds) describes how to locate the genomic DNA, mRNA, and protein (amino acid) sequences for a specific gene, using NCBI's Entrez Gene resource.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/01/finding_gene_sequences_screenc.html http://blog.vcu.edu/lse/2006/01/finding_gene_sequences_screenc.html Sun, 29 Jan 2006 16:14:55 -0500 Finding Information about a Gene (screencast tutorial) This video tutorial (47 seconds) provides basic instructions for using NCBI's Entrez Gene resource to find information about a specific gene.

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/01/finding_information_about_a_ge.html http://blog.vcu.edu/lse/2006/01/finding_information_about_a_ge.html Sun, 29 Jan 2006 15:59:13 -0500 Quickly Finding the Full-text Databases (screencast tutorial) This tutorial (29 seconds) shows how to quickly identify all the full-text databases in a particular subject area when you're using the "databases by subject area" tool accessible from the library home page.


view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/01/quickly_finding_the_fulltext_d.html http://blog.vcu.edu/lse/2006/01/quickly_finding_the_fulltext_d.html Sun, 29 Jan 2006 13:04:53 -0500 Searching Multiple Databases at the Same Time (screencast tutorial) This can be an effective technique when exploring an unfamiliar subject area, carrying out an extensive literature review, or searching a cross-disciplinary / interdisciplinary topic (1 minute 35 seconds).

view_screencast_button_v1.jpg

]]> http://blog.vcu.edu/lse/2006/01/searching_multiple_databases_a.html http://blog.vcu.edu/lse/2006/01/searching_multiple_databases_a.html Sun, 29 Jan 2006 12:57:52 -0500